The Digital Slide Archive

Yishai Rasowsky
2 min readFeb 13, 2023

Unlocking the Power of Histopathology Imaging with Girder

Photo by Masaru Suzuki on Unsplash

The Digital Slide Archive (DSA) is an innovative platform for the analysis, visualization, management, and annotation of whole-slide digital pathology imaging data. It is powered by Girder, an open source data management platform, and includes a plugin for pathology image annotations and analysis.

With the Digital Slide Archive, users can unlock the full potential of histopathology imaging, enabling them to search, visualize, and analyze whole-slide digital images quickly and accurately.

The Digital Slide Archive is built on the Girder platform, a powerful data management platform that provides users with the ability to store and manage large amounts of data in a secure and organized fashion.

As a web-based platform, the DSA allows for the multi-resolution visualization of whole-slide histopathology images overlaid with human/algorithm generated annotations. It also allows users to search their data by metadata, enabling them to quickly locate specific images and annotations.

The DSA is an incredibly powerful tool for pathology research, allowing users to accurately and quickly analyze large amounts of data. For example, users can compare multiple images from different slides and create detailed annotations.

These annotations can then be used to track changes in tissue over time or to compare different tissue types. The DSA also allows for the analysis of individual slides, enabling users to identify specific cells or patterns in an image.

In addition to its powerful analysis capabilities, the Digital Slide Archive also has a number of other benefits. For instance, users can easily share images and annotations with colleagues, making collaboration easier. The platform also supports HIPAA-compliant data storage, allowing users to protect their data while still allowing access to those with permission.

Overall, the Digital Slide Archive is an incredibly powerful tool for researchers and histopathology professionals. By leveraging the power of Girder, the Digital Slide Archive provides users with the ability to efficiently visualize and analyze whole-slide digital pathology images. With its powerful search, analysis, and collaboration capabilities, the Digital Slide Archive unlocks the full potential of histopathology imaging, making it a valuable resource for research and diagnosis.

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